HL_7PJU_053

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7PJU|1|A|A|2268, 7PJU|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJU_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0824

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7PJU|1|A|C|2264
7PJU|1|A|U|2265
7PJU|1|A|A|2266
7PJU|1|A|A|2267
7PJU|1|A|A|2268
7PJU|1|A|G|2269
7PJU|1|A|A|2270
7PJU|1|A|G|2271
7PJU|1|A|U|2272
7PJU|1|A|A|2273
7PJU|1|A|A|2274
7PJU|1|A|C|2275
7PJU|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27