HL_7PJU_078

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJU_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.096

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7PJU|1|a|A|320
7PJU|1|a|A|321
7PJU|1|a|C|322
7PJU|1|a|U|323
7PJU|1|a|G|324
7PJU|1|a|A|325
7PJU|1|a|G|326
7PJU|1|a|A|327
7PJU|1|a|C|328
7PJU|1|a|A|329
7PJU|1|a|C|330
7PJU|1|a|G|331
7PJU|1|a|G|332
7PJU|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20