HL_7PJU_094

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7PJU|1|a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJU_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1197

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7PJU|1|a|G|1089
7PJU|1|a|U|1090
7PJU|1|a|U|1091
7PJU|1|a|A|1092
7PJU|1|a|A|1093
7PJU|1|a|G|1094
7PJU|1|a|U|1095
7PJU|1|a|C|1096

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7

Chain u

30S ribosomal protein S21