HL_7PJW_111

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUGCCAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJW_111 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3117

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

7PJW|1|A|C|2699
7PJW|1|A|A|2700
7PJW|1|A|U|2701
7PJW|1|A|G|2702
7PJW|1|A|C|2703
7PJW|1|A|C|2704
7PJW|1|A|A|2705
7PJW|1|A|A|2706
7PJW|1|A|U|2707
7PJW|1|A|G|2708

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17