HL_7PJX_004

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

7PJX|1|A|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJX_004 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.2492

The information below is about HL_2NUE_001

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7PJX|1|A|U|137
7PJX|1|A|U|138
7PJX|1|A|U|139
7PJX|1|A|C|140
7PJX|1|A|G|141
7PJX|1|A|A|142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23