HL_7PJX_088

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7PJX|1|a|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJX_088 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2869

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7PJX|1|a|C|840
7PJX|1|a|C|841
7PJX|1|a|U|842
7PJX|1|a|U|843
7PJX|1|a|G|844
7PJX|1|a|A|845
7PJX|1|a|G|846

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S18