3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGUAAUAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7PJY_027 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.268
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.2
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

7PJY|1|A|C|1092
7PJY|1|A|G|1093
7PJY|1|A|U|1094
7PJY|1|A|A|1095
7PJY|1|A|A|1096
7PJY|1|A|U|1097
7PJY|1|A|A|1098
7PJY|1|A|G|1099

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain G
50S ribosomal protein L6
Chain I
50S ribosomal protein L11
Chain x
Elongation factor G

Coloring options:


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