3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
7PJY|1|A|A|1913, 7PJY|1|A|C|1914, 7PJY|1|A|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7PJY_046 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.0989
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

7PJY|1|A|G|1910
7PJY|1|A|PSU|1911
7PJY|1|A|A|1912
7PJY|1|A|A|1913
7PJY|1|A|C|1914
7PJY|1|A|3TD|1915
7PJY|1|A|A|1916
7PJY|1|A|PSU|1917
7PJY|1|A|A|1918
7PJY|1|A|A|1919
7PJY|1|A|C|1920

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain w
Transfer RNA; tRNA
Chain x
Elongation factor G

Coloring options:


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