3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
7PJY|1|A|G|2250
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7PJY_051 not in the Motif Atlas
Homologous match to HL_7A0S_052
Geometric discrepancy: 0.1044
The information below is about HL_7A0S_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11974.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

7PJY|1|A|C|2248
7PJY|1|A|U|2249
7PJY|1|A|G|2250
7PJY|1|A|OMG|2251
7PJY|1|A|G|2252
7PJY|1|A|G|2253
7PJY|1|A|C|2254
7PJY|1|A|G|2255
7PJY|1|A|G|2256

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27
Chain w
Transfer RNA; tRNA

Coloring options:


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