HL_7PJY_052

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7PJY|1|A|A|2268, 7PJY|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJY_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0901

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7PJY|1|A|C|2264
7PJY|1|A|U|2265
7PJY|1|A|A|2266
7PJY|1|A|A|2267
7PJY|1|A|A|2268
7PJY|1|A|G|2269
7PJY|1|A|A|2270
7PJY|1|A|G|2271
7PJY|1|A|U|2272
7PJY|1|A|A|2273
7PJY|1|A|A|2274
7PJY|1|A|C|2275
7PJY|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27