HL_7PJY_074

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGGACCUUCGGGCCU

Length

16 nucleotides

Bulged bases

7PJY|1|a|G|204, 7PJY|1|a|A|205, 7PJY|1|a|C|206, 7PJY|1|a|U|209, 7PJY|1|a|G|211, 7PJY|1|a|C|215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJY_074 not in the Motif Atlas

Geometric match to HL_8C3A_012

Geometric discrepancy: 0.3689

The information below is about HL_8C3A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7PJY|1|a|G|201
7PJY|1|a|G|202
7PJY|1|a|G|203
7PJY|1|a|G|204
7PJY|1|a|A|205
7PJY|1|a|C|206
7PJY|1|a|C|207
7PJY|1|a|U|208
7PJY|1|a|U|209
7PJY|1|a|C|210
7PJY|1|a|G|211
7PJY|1|a|G|212
7PJY|1|a|G|213
7PJY|1|a|C|214
7PJY|1|a|C|215
7PJY|1|a|U|216

Current chains

Chain a

16S ribosomal RNA

Nearby chains