3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
(PSU)GCUAACG
Length
8 nucleotides
Bulged bases
7PJY|1|A|U|958, 7PJY|1|A|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7PJY_108 not in the Motif Atlas
Homologous match to HL_4WF9_027
Geometric discrepancy: 0.2258
The information below is about HL_4WF9_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

7PJY|1|A|PSU|955
7PJY|1|A|G|956
7PJY|1|A|C|957
7PJY|1|A|U|958
7PJY|1|A|A|959
7PJY|1|A|A|960
7PJY|1|A|C|961
7PJY|1|A|G|962

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16

Coloring options:


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