HL_7PJZ_104
3D structure
- PDB id
- 7PJZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 7PJZ|1|w|C|17, 7PJZ|1|w|G|18, 7PJZ|1|w|G|19, 7PJZ|1|w|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PJZ_104 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.2317
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
7PJZ|1|w|C|13
7PJZ|1|w|A|14
7PJZ|1|w|G|15
7PJZ|1|w|U|16
7PJZ|1|w|C|17
7PJZ|1|w|G|18
7PJZ|1|w|G|19
7PJZ|1|w|U|20
7PJZ|1|w|A|21
7PJZ|1|w|G|22
Current chains
- Chain w
- P-site fMet-Phe-tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
Coloring options: