7PJZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7PJZ_107 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_7PJZ_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_7PJZ_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_7PJZ_004 | 1/A/137:142 | No text annotation | geometric HL_5MSF_001 HL_89167.1 | |
| HL_7PJZ_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_7PJZ_006 | 1/A/194:201 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_7PJZ_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_7PJZ_008 | 1/A/246:252 | No text annotation | homologous HL_7A0S_008 HL_76371.1 | |
| HL_7PJZ_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_7PJZ_010 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_7PJZ_011 | 1/A/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_7PJZ_012 | 1/A/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_7PJZ_013 | 1/A/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_7PJZ_014 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_7PJZ_109 | 1/A/545:548 | No text annotation | ||
| HL_7PJZ_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_7PJZ_017 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_7PJZ_018 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_7PJZ_019 | 1/A/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_7PJZ_020 | 1/A/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_7PJZ_021 | 1/A/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_7PJZ_022 | 1/A/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_7PJZ_023 | 1/A/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_7PJZ_024 | 1/A/880:897 | No text annotation | ||
| HL_7PJZ_117 | 1/A/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_7PJZ_026 | 1/A/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_7PJZ_027 | 1/A/1092:1099 | Mini UNCG | geometric HL_4TUW_002 HL_12626.1 | |
| HL_7PJZ_028 | 1/A/1169:1180 | No text annotation | ||
| HL_7PJZ_029 | 1/A/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_7PJZ_030 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_7PJZ_031 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_7PJZ_032 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_7PJZ_033 | 1/A/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_7PJZ_034 | 1/A/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 NA | |
| HL_7PJZ_035 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_7PJZ_036 | 1/A/1533:1538 | No text annotation | ||
| HL_7PJZ_037 | 1/A/1565:1568 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_7PJZ_038 | 1/A/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_7PJZ_039 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_7PJZ_040 | 1/A/1691:1696 | UNCG | geometric HL_4PMI_004 NA | |
| HL_7PJZ_041 | 1/A/1728:1731 | Mini UNCG | geometric HL_5F9R_002 HL_90436.1 | |
| HL_7PJZ_042 | 1/A/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_7PJZ_043 | 1/A/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_7PJZ_044 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_7PJZ_045 | 1/A/1868:1873 | GNRA | geometric HL_4QLM_001 HL_34789.1 | |
| HL_7PJZ_046 | 1/A/1910:1920 | No text annotation | ||
| HL_7PJZ_047 | 1/A/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_7PJZ_048 | 1/A/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_7PJZ_049 | 1/A/2138:2153 | No text annotation | ||
| HL_7PJZ_050 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_7PJZ_051 | 1/A/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_7PJZ_052 | 1/A/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_7PJZ_118 | 1/A/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_7PJZ_111 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_9DFE_054 HL_52651.1 | |
| HL_7PJZ_055 | 1/A/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_7PJZ_056 | 1/A/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_7PJZ_112 | 1/A/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_7PJZ_058 | 1/A/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_7PJZ_059 | 1/A/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_7PJZ_060 | 1/A/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_7PJZ_061 | 1/A/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_7PJZ_062 | 1/A/2658:2663 | GNRA | homologous HL_7A0S_063 HL_34789.1 | |
| HL_7PJZ_063 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_7PJZ_064 | 1/A/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_7PJZ_065 | 1/A/2796:2799 | No text annotation | ||
| HL_7PJZ_066 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_7PJZ_067 | 1/A/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_7PJZ_113 | 1/B/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_7PJZ_068 | 1/B/38:44 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_7PJZ_069 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_7PJZ_070 | 1/a/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_7PJZ_071 | 1/a/79:90 | No text annotation | ||
| HL_7PJZ_072 | 1/a/156:165 | No text annotation | ||
| HL_7PJZ_073 | 1/a/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_7PJZ_074 | 1/a/201:216 | No text annotation | ||
| HL_7PJZ_075 | 1/a/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_7PJZ_076 | 1/a/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_7PJZ_077 | 1/a/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_7PJZ_078 | 1/a/342:347 | UNCG | homologous HL_5J7L_009 NA | |
| HL_7PJZ_079 | 1/a/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_7PJZ_080 | 1/a/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_7PJZ_081 | 1/a/458:474 | No text annotation | ||
| HL_7PJZ_114 | 1/a/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.1 | |
| HL_7PJZ_083 | 1/a/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_7PJZ_084 | 1/a/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_7PJZ_085 | 1/a/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_7PJZ_086 | 1/a/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_7PJZ_087 | 1/a/840:846 | No text annotation | geometric HL_2Y8W_001 NA | |
| HL_7PJZ_088 | 1/a/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_7PJZ_089 | 1/a/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_7PJZ_090 | 1/a/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_7PJZ_091 | 1/a/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_7PJZ_092 | 1/a/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_7PJZ_093 | 1/a/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_7PJZ_115 | 1/a/1134:1141 | No text annotation | ||
| HL_7PJZ_095 | 1/a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_7PJZ_096 | 1/a/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_7PJZ_097 | 1/a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_7PJZ_098 | 1/a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_7PJZ_099 | 1/a/1449:1454 | UNCG | homologous HL_5J7L_030 NA | |
| HL_7PJZ_100 | 1/a/1515:1520 | GNRA | homologous HL_5J7L_031 NA | |
| HL_7PJZ_101 | 1/v/13:22 | tRNA D-loop | homologous HL_6JXM_001 NA | |
| HL_7PJZ_102 | 1/v/31:39 | tRNA anticodon loop | homologous HL_4WT8_216 NA | |
| HL_7PJZ_103 | 1/v/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5L4O_003 NA | |
| HL_7PJZ_104 | 1/w/13:22 | tRNA D-loop | homologous HL_1QF6_001 NA | |
| HL_7PJZ_105 | 1/w/30:40 | No text annotation | homologous HL_1B23_002 NA | |
| HL_7PJZ_116 | 1/w/52:62 | No text annotation | homologous HL_5E81_236 NA | |
| HL_7PJZ_106 | 1/w/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QF6_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7PJZ_001 | No text annotation | ||
| HL_7PJZ_108 | No text annotation | ||
| HL_7PJZ_015 | UNCG variation | ||
| HL_7PJZ_025 | No text annotation | ||
| HL_7PJZ_110 | No text annotation | ||
| HL_7PJZ_053 | No text annotation | ||
| HL_7PJZ_054 | No text annotation | ||
| HL_7PJZ_057 | tRNA anticodon loop | ||
| HL_7PJZ_082 | No text annotation | ||
| HL_7PJZ_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7PJZ_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_7PJZ_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7PJZ_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_7PJZ_004 | 1/A/81:85, 1/A/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_7PJZ_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
| IL_7PJZ_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_045 IL_62167.1 | |
| IL_7PJZ_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_7PJZ_008 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_7PJZ_009 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_7PJZ_010 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_7PJZ_011 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_7PJZ_012 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_7PJZ_013 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_7PJZ_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_7PJZ_015 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.1 | |
| IL_7PJZ_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7PJZ_017 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_7A0S_016 IL_14190.1 | |
| IL_7PJZ_018 | 1/A/702:703, 1/A/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_7PJZ_019 | 1/A/703:707, 1/A/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_7PJZ_020 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_7PJZ_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_7PJZ_022 | 1/A/844:847, 1/A/933:934 | 90 degree turn | homologous IL_5J7L_267 NA | |
| IL_7PJZ_175 | 1/A/844:848, 1/A/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_7PJZ_023 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_7PJZ_176 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_7PJZ_025 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_7PJZ_026 | 1/A/862:863, 1/A/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_7PJZ_027 | 1/A/864:868, 1/A/909:912 | C-loop | geometric IL_4MGN_001 IL_63596.12 | |
| IL_7PJZ_028 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_7PJZ_029 | 1/A/875:879, 1/A/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_7PJZ_030 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_7PJZ_031 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_7PJZ_032 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_7PJZ_033 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_7PJZ_034 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_7PJZ_035 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_7PJZ_036 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_7PJZ_037 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_7PJZ_038 | 1/A/1043:1052, 1/A/1107:1112 | No text annotation | ||
| IL_7PJZ_039 | 1/A/1055:1091, 1/A/1100:1104 | No text annotation | ||
| IL_7PJZ_040 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_7PJZ_204 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_7PJZ_042 | 1/A/1208:1216, 1/A/1233:1238 | No text annotation | ||
| IL_7PJZ_043 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7PJZ_044 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.1 | |
| IL_7PJZ_045 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_7PJZ_046 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_7PJZ_047 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_7PJZ_048 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_7PJZ_049 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_7PJZ_050 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_7PJZ_051 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_7PJZ_052 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_5J7L_298 NA | |
| IL_7PJZ_053 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_7PJZ_178 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_7PJZ_055 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_7PJZ_056 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_7PJZ_057 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_7PJZ_058 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_7PJZ_059 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_7PJZ_060 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7A0S_061 IL_74641.1 | |
| IL_7PJZ_061 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_7PJZ_062 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_7PJZ_205 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_7PJZ_064 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C | homologous IL_5J7L_311 NA | |
| IL_7PJZ_065 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_14190.1 | |
| IL_7PJZ_066 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_7PJZ_067 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_7PJZ_068 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_7PJZ_069 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_7PJZ_181 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_7PJZ_070 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_7PJZ_071 | 1/A/1933:1934, 1/A/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_7PJZ_072 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_7PJZ_073 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_7PJZ_074 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_7PJZ_206 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_97561.1 | |
| IL_7PJZ_077 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_34520.1 | |
| IL_7PJZ_184 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_7PJZ_079 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_7PJZ_207 | 1/A/2103:2124, 1/A/2174:2186 | No text annotation | ||
| IL_7PJZ_186 | 1/A/2124:2127, 1/A/2161:2174 | No text annotation | ||
| IL_7PJZ_081 | 1/A/2128:2138, 1/A/2153:2160 | No text annotation | ||
| IL_7PJZ_082 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_7PJZ_083 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_7PJZ_208 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_7PJZ_085 | 1/A/2453:2455, 1/A/2496:2500 | No text annotation | homologous IL_5J7L_335 NA | |
| IL_7PJZ_187 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | homologous IL_5J7L_393 NA | |
| IL_7PJZ_087 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_7PJZ_088 | 1/A/2466:2470, 1/A/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_7PJZ_188 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_7PJZ_090 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_7PJZ_189 | 1/A/2510:2513, 1/A/2571:2578 | No text annotation | ||
| IL_7PJZ_091 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_7PJZ_092 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.1 | |
| IL_7PJZ_094 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
| IL_7PJZ_095 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_7PJZ_096 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_7PJZ_097 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_7PJZ_098 | 1/A/2687:2691, 1/A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_7PJZ_099 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_7PJZ_100 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_7PJZ_101 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_14190.1 | |
| IL_7PJZ_102 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_7PJZ_103 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_78536.1 | |
| IL_7PJZ_104 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_7PJZ_105 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_7PJZ_106 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_7PJZ_107 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_7PJZ_108 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_7PJZ_109 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 NA | |
| IL_7PJZ_110 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_7PJZ_111 | 1/a/29:32, 1/a/552:554 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 NA | |
| IL_7PJZ_112 | 1/a/44:45, 1/a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_7PJZ_113 | 1/a/47:52, 1/a/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_7PJZ_114 | 1/a/54:56, 1/a/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_7PJZ_115 | 1/a/63:66, 1/a/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_7PJZ_116 | 1/a/67:69, 1/a/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_7PJZ_117 | 1/a/70:73, 1/a/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_7PJZ_118 | 1/a/75:76, 1/a/93:95 | Single bulged G | homologous IL_5J7L_395 NA | |
| IL_7PJZ_119 | 1/a/128:131, 1/a/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_7PJZ_120 | 1/a/132:136, 1/a/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_7PJZ_209 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_7PJZ_122 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_7PJZ_123 | 1/a/249:252, 1/a/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_7PJZ_124 | 1/a/292:293, 1/a/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_7PJZ_190 | 1/a/339:340, 1/a/349:351 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7PJZ_125 | 1/a/367:369, 1/a/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_7PJZ_126 | 1/a/371:375, 1/a/389:390 | No text annotation | ||
| IL_7PJZ_127 | 1/a/375:376, 1/a/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_7PJZ_128 | 1/a/409:416, 1/a/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_7PJZ_129 | 1/a/440:444, 1/a/490:497 | No text annotation | ||
| IL_7PJZ_130 | 1/a/446:450, 1/a/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
| IL_7PJZ_131 | 1/a/450:455, 1/a/477:483 | No text annotation | geometric IL_5J7L_023 NA | |
| IL_7PJZ_132 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_7PJZ_133 | 1/a/515:521, 1/a/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7PJZ_134 | 1/a/569:575, 1/a/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_7PJZ_135 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_7PJZ_136 | 1/a/594:596, 1/a/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_7PJZ_137 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
| IL_7PJZ_138 | 1/a/605:612, 1/a/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_7PJZ_139 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_7PJZ_140 | 1/a/659:660, 1/a/745:747 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_7PJZ_141 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_7PJZ_195 | 1/a/673:677, 1/a/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_7PJZ_143 | 1/a/684:688, 1/a/699:706 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_7PJZ_210 | 1/a/774:778, 1/a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_7PJZ_145 | 1/a/779:783, 1/a/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_7PJZ_146 | 1/a/887:896, 1/a/903:910 | 10x8 Sarcin-Ricin; G-bulge | geometric IL_6UFM_002 NA | |
| IL_7PJZ_147 | 1/a/922:923, 1/a/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.1 | |
| IL_7PJZ_148 | 1/a/925:927, 1/a/1390:1391 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_7PJZ_149 | 1/a/933:935, 1/a/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_7PJZ_150 | 1/a/953:954, 1/a/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
| IL_7PJZ_151 | 1/a/993:997, 1/a/1044:1045 | Minor groove platform | homologous IL_6CZR_151 NA | |
| IL_7PJZ_197 | 1/a/997:999, 1/a/1041:1044 | No text annotation | geometric IL_8C3A_070 NA | |
| IL_7PJZ_152 | 1/a/998:999, 1/a/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_7PJZ_153 | 1/a/1003:1007, 1/a/1022:1037 | No text annotation | ||
| IL_7PJZ_154 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_7PJZ_156 | 1/a/1052:1056, 1/a/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_7PJZ_157 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_7PJZ_158 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_7PJZ_159 | 1/a/1061:1063, 1/a/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_7PJZ_160 | 1/a/1124:1128, 1/a/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_7PJZ_161 | 1/a/1129:1132, 1/a/1142:1143 | No text annotation | ||
| IL_7PJZ_201 | 1/a/1132:1134, 1/a/1141:1142 | No text annotation | ||
| IL_7PJZ_211 | 1/a/1158:1161, 1/a/1175:1181 | No text annotation | ||
| IL_7PJZ_202 | 1/a/1247:1253, 1/a/1284:1290 | No text annotation | homologous IL_6CZR_160 NA | |
| IL_7PJZ_164 | 1/a/1255:1258, 1/a/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_7PJZ_165 | 1/a/1259:1263, 1/a/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_7PJZ_166 | 1/a/1303:1308, 1/a/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_7PJZ_167 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_7PJZ_168 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7PJZ_169 | 1/a/1405:1409, 1/a/1491:1496 | No text annotation | homologous IL_4LFB_058 NA | |
| IL_7PJZ_170 | 1/a/1412:1414, 1/a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_7PJZ_171 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_7PJZ_212 | 1/a/1430:1435, 1/a/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_7PJZ_173 | 1/a/1440:1442, 1/a/1460:1461 | Single bulged A | geometric IL_2OZB_001 NA | |
| IL_7PJZ_174 | 1/a/1445:1448, 1/a/1455:1457 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7PJZ_024 | No text annotation | ||
| IL_7PJZ_177 | UAA/GAN with extra cWW | ||
| IL_7PJZ_041 | No text annotation | ||
| IL_7PJZ_054 | No text annotation | ||
| IL_7PJZ_063 | Triple sheared with non-canonical cWW | ||
| IL_7PJZ_179 | Isolated non-canonical cWW pair | ||
| IL_7PJZ_180 | No text annotation | ||
| IL_7PJZ_075 | No text annotation | ||
| IL_7PJZ_182 | No text annotation | ||
| IL_7PJZ_076 | Isolated cWH basepair | ||
| IL_7PJZ_183 | No text annotation | ||
| IL_7PJZ_078 | No text annotation | ||
| IL_7PJZ_185 | No text annotation | ||
| IL_7PJZ_080 | No text annotation | ||
| IL_7PJZ_084 | Isolated non-canonical cWW pair | ||
| IL_7PJZ_086 | No text annotation | ||
| IL_7PJZ_089 | No text annotation | ||
| IL_7PJZ_093 | No text annotation | ||
| IL_7PJZ_121 | No text annotation | ||
| IL_7PJZ_191 | No text annotation | ||
| IL_7PJZ_192 | No text annotation | ||
| IL_7PJZ_193 | Isolated cWH basepair | ||
| IL_7PJZ_194 | No text annotation | ||
| IL_7PJZ_142 | No text annotation | ||
| IL_7PJZ_196 | No text annotation | ||
| IL_7PJZ_144 | Other IL | ||
| IL_7PJZ_198 | No text annotation | ||
| IL_7PJZ_155 | Isolated non-canonical cWW pair | ||
| IL_7PJZ_199 | No text annotation | ||
| IL_7PJZ_200 | No text annotation | ||
| IL_7PJZ_162 | No text annotation | ||
| IL_7PJZ_163 | No text annotation | ||
| IL_7PJZ_172 | No text annotation | ||
| IL_7PJZ_203 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7PJZ_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_7PJZ_027 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_7PJZ_028 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_7PJZ_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_7PJZ_003 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_7PJZ_004 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7PJZ_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_7PJZ_006 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_7PJZ_007 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_7PJZ_008 | 1/A/1344:1349, 1/A/1382:1387, 1/A/1400:1403 | No text annotation | ||
| J3_7PJZ_031 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_7PJZ_009 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_7PJZ_039 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7PJZ_010 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_7PJZ_011 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_7PJZ_012 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_7PJZ_013 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_7PJZ_014 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_7PJZ_015 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_7PJZ_033 | 1/a/46:52, 1/a/359:367, 1/a/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_7PJZ_016 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_7PJZ_034 | 1/a/586:588, 1/a/651:655, 1/a/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_7PJZ_017 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_7PJZ_018 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_7PJZ_019 | 1/a/936:939, 1/a/1344:1350, 1/a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_7PJZ_020 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_7PJZ_021 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_7PJZ_022 | 1/a/990:993, 1/a/1045:1047, 1/a/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_7PJZ_036 | 1/a/990:997, 1/a/1044:1047, 1/a/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_7PJZ_023 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_7PJZ_040 | 1/a/1073:1075, 1/a/1082:1086, 1/a/1099:1102 | No text annotation | ||
| J3_7PJZ_025 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation | geometric J3_5J7L_010 NA | |
| J3_7PJZ_041 | 1/a/1116:1118, 1/a/1155:1161, 1/a/1175:1184 | No text annotation | homologous J3_6CZR_025 NA | |
| J3_7PJZ_026 | 1/a/1237:1241, 1/a/1296:1303, 1/a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_7PJZ_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_7PJZ_002 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_7PJZ_003 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_7PJZ_004 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_7PJZ_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_7PJZ_016 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_7PJZ_006 | 1/A/1444:1447, 1/A/1464:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | ||
| J4_7PJZ_007 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_7PJZ_008 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_7PJZ_009 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_7PJZ_010 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_7PJZ_017 | 1/a/115:122, 1/a/239:240, 1/a/286:289, 1/a/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_7PJZ_018 | 1/a/142:146, 1/a/176:184, 1/a/193:198, 1/a/219:221 | No text annotation | ||
| J4_7PJZ_013 | 1/a/575:577, 1/a/764:769, 1/a/810:821, 1/a/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_7PJZ_014 | 1/v/7:10, 1/v/25:27, 1/v/43:49, 1/v/65:66 | tRNA junction | homologous J4_1QU2_001 J4_58311.1 | |
| J4_7PJZ_015 | 1/w/7:10, 1/w/25:27, 1/w/43:49, 1/w/65:66 | tRNA junction | homologous J4_3TUP_001 J4_58311.1 | |
| J5_7PJZ_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_7PJZ_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_7PJZ_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_7PJZ_004 | 1/A/1666:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1994 | No text annotation | ||
| J5_7PJZ_005 | 1/A/1669:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1993 | No text annotation | ||
| J5_7PJZ_006 | 1/A/2057:2064, 1/A/2446:2455, 1/A/2496:2507, 1/A/2582:2588, 1/A/2606:2611 | No text annotation | ||
| J5_7PJZ_007 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2282, 1/A/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_7PJZ_008 | 1/a/36:39, 1/a/403:406, 1/a/436:440, 1/a/497:500, 1/a/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_7PJZ_009 | 1/a/58:61, 1/a/106:113, 1/a/314:316, 1/a/337:339, 1/a/351:354 | No text annotation | homologous J5_6CZR_021 NA | |
| J6_7PJZ_001 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J7_7PJZ_003 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_7PJZ_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7PJZ_029 | No text annotation | ||
| J3_7PJZ_030 | No text annotation | ||
| J3_7PJZ_032 | No text annotation | ||
| J3_7PJZ_035 | No text annotation | ||
| J3_7PJZ_024 | No text annotation | ||
| J3_7PJZ_037 | No text annotation | ||
| J3_7PJZ_038 | No text annotation | ||
| J4_7PJZ_011 | No text annotation | ||
| J4_7PJZ_012 | No text annotation | ||
| J7_7PJZ_001 | No text annotation |
Coloring options: