HL_7PKQ_005
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUUAACGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PKQ_005 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2411
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7PKQ|1|2|C|105
7PKQ|1|2|U|106
7PKQ|1|2|U|107
7PKQ|1|2|A|108
7PKQ|1|2|A|109
7PKQ|1|2|C|110
7PKQ|1|2|G|111
7PKQ|1|2|G|112
Current chains
- Chain 2
- S2 rRNA
Nearby chains
- Chain 1
- S1 rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain e
- S5 DRBM domain-containing protein
- Chain h
- uS8m
- Chain l
- uS12m
- Chain q
- uS17m
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