HL_7PKQ_020
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAUCAUUAGCGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PKQ_020 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1886
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7PKQ|1|4|G|267
7PKQ|1|4|A|268
7PKQ|1|4|U|269
7PKQ|1|4|C|270
7PKQ|1|4|A|271
7PKQ|1|4|U|272
7PKQ|1|4|U|273
7PKQ|1|4|A|274
7PKQ|1|4|G|275
7PKQ|1|4|C|276
7PKQ|1|4|G|277
7PKQ|1|4|C|278
Current chains
- Chain 4
- S4 rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9, chloroplastic
- Chain j
- Ribosomal_S10 domain-containing protein
- Chain m
- Mitochondrial ribosomal protein S13
- Chain n
- Mitochondrial ribosomal protein S14
- Chain u
- Plastid-specific ribosomal protein 4
- Chain y
- mS33
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