HL_7PKQ_023

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PKQ_023 not in the Motif Atlas

Geometric match to HL_1KXK_001

Geometric discrepancy: 0.2028

The information below is about HL_1KXK_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7PKQ|1|2|U|106
7PKQ|1|2|U|107
7PKQ|1|2|A|108
7PKQ|1|2|A|109
7PKQ|1|2|C|110
7PKQ|1|2|G|111

Current chains

Chain 2

S2 rRNA

Nearby chains

Chain 1

S1 rRNA

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain e

S5 DRBM domain-containing protein

Chain h

uS8m

Chain q

uS17m