HL_7PNX_001

3D structure

PDB id

7PNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

7PNX|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PNX_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1346

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7PNX|1|A|U|654
7PNX|1|A|U|655
7PNX|1|A|U|656
7PNX|1|A|G|657
7PNX|1|A|G|658
7PNX|1|A|U|659
7PNX|1|A|C|660
7PNX|1|A|C|661
7PNX|1|A|U|662
7PNX|1|A|A|663
7PNX|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial