HL_7PNX_011

3D structure

PDB id

7PNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GA(5MU)UAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PNX_011 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.4383

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7PNX|1|A|G|1074
7PNX|1|A|A|1075
7PNX|1|A|5MU|1076
7PNX|1|A|U|1077
7PNX|1|A|A|1078
7PNX|1|A|G|1079
7PNX|1|A|A|1080
7PNX|1|A|U|1081
7PNX|1|A|A|1082
7PNX|1|A|C|1083
7PNX|1|A|C|1084

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain I

28S ribosomal protein S11, mitochondrial

Chain b

12S rRNA N4-methylcytidine (m4C) methyltransferase