HL_7PNZ_001

3D structure

PDB id

7PNZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

7PNZ|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PNZ_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1413

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7PNZ|1|A|U|654
7PNZ|1|A|U|655
7PNZ|1|A|U|656
7PNZ|1|A|G|657
7PNZ|1|A|G|658
7PNZ|1|A|U|659
7PNZ|1|A|C|660
7PNZ|1|A|C|661
7PNZ|1|A|U|662
7PNZ|1|A|A|663
7PNZ|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial