HL_7PO4_005
3D structure
- PDB id
- 7PO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- UUCUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 7PO4|1|A|G|1851, 7PO4|1|A|U|1854, 7PO4|1|A|A|1855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PO4_005 not in the Motif Atlas
- Geometric match to HL_3ICQ_005
- Geometric discrepancy: 0.3605
- The information below is about HL_3ICQ_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
7PO4|1|A|U|1847
7PO4|1|A|U|1848
7PO4|1|A|C|1849
7PO4|1|A|U|1850
7PO4|1|A|G|1851
7PO4|1|A|C|1852
7PO4|1|A|A|1853
7PO4|1|A|U|1854
7PO4|1|A|A|1855
7PO4|1|A|A|1856
Current chains
- Chain A
- 16SrRNA
Nearby chains
- Chain S
- 39S ribosomal protein L21, mitochondrial
Coloring options: