HL_7PO4_008

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

7PO4|1|A|A|1991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PO4_008 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2031

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7PO4|1|A|G|1988
7PO4|1|A|C|1989
7PO4|1|A|G|1990
7PO4|1|A|A|1991
7PO4|1|A|C|1992
7PO4|1|A|A|1993
7PO4|1|A|A|1994
7PO4|1|A|A|1995
7PO4|1|A|C|1996

Current chains

Chain A

16SrRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial