HL_7PO4_011

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

7PO4|1|A|A|2110, 7PO4|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PO4_011 not in the Motif Atlas

Geometric match to HL_7RQB_027

Geometric discrepancy: 0.1862

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7PO4|1|A|G|2107
7PO4|1|A|G|2108
7PO4|1|A|A|2109
7PO4|1|A|A|2110
7PO4|1|A|C|2111
7PO4|1|A|A|2112
7PO4|1|A|G|2113
7PO4|1|A|C|2114

Current chains

Chain A

16SrRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial