HL_7PO4_019

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

7PO4|1|A|A|2432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PO4_019 not in the Motif Atlas

Geometric match to HL_5TBW_075

Geometric discrepancy: 0.26

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7PO4|1|A|C|2428
7PO4|1|A|A|2429
7PO4|1|A|A|2430
7PO4|1|A|C|2431
7PO4|1|A|A|2432
7PO4|1|A|C|2433
7PO4|1|A|A|2434
7PO4|1|A|G|2435

Current chains

Chain A

16SrRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial