HL_7PTS_008

3D structure

PDB id

7PTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA origami 5-helix tile

Experimental method

ELECTRON MICROSCOPY

Resolution

5.71 Å

Loop

Sequence

CAACGACUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PTS_008 not in the Motif Atlas

Geometric match to HL_4PJO_001

Geometric discrepancy: 0.1231

The information below is about HL_4PJO_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67407.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7PTS|1|A|C|205
7PTS|1|A|A|206
7PTS|1|A|A|207
7PTS|1|A|C|208
7PTS|1|A|G|209
7PTS|1|A|A|210
7PTS|1|A|C|211
7PTS|1|A|U|212
7PTS|1|A|G|213
7PTS|1|A|A|214
7PTS|1|A|G|215

Current chains

Chain A

5HT-B

Nearby chains