HL_7PTS_011

3D structure

PDB id

7PTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA origami 5-helix tile

Experimental method

ELECTRON MICROSCOPY

Resolution

5.71 Å

Loop

Sequence

CAACAGUCGAG

Length

11 nucleotides

Bulged bases

7PTS|1|A|A|339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PTS_011 not in the Motif Atlas

Geometric match to HL_4PJO_001

Geometric discrepancy: 0.1246

The information below is about HL_4PJO_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67407.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7PTS|1|A|C|337
7PTS|1|A|A|338
7PTS|1|A|A|339
7PTS|1|A|C|340
7PTS|1|A|A|341
7PTS|1|A|G|342
7PTS|1|A|U|343
7PTS|1|A|C|344
7PTS|1|A|G|345
7PTS|1|A|A|346
7PTS|1|A|G|347

Current chains

Chain A

5HT-B

Nearby chains