HL_7PWG_007

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUGCAAGCC

Length

9 nucleotides

Bulged bases

7PWG|1|1|G|184, 7PWG|1|1|C|185, 7PWG|1|1|A|186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.119

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7PWG|1|1|G|182
7PWG|1|1|U|183
7PWG|1|1|G|184
7PWG|1|1|C|185
7PWG|1|1|A|186
7PWG|1|1|A|187
7PWG|1|1|G|188
7PWG|1|1|C|189
7PWG|1|1|C|190

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 4

rRNA 5.8S

Chain C

Ribosomal protein L4

Chain Y

Ribosomal protein L26