HL_7PWG_010

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGCGA(OMG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_010 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3627

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PWG|1|1|G|307
7PWG|1|1|C|308
7PWG|1|1|G|309
7PWG|1|1|C|310
7PWG|1|1|G|311
7PWG|1|1|A|312
7PWG|1|1|OMG|313
7PWG|1|1|C|314

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C

Ribosomal protein L4

Chain j

Ribosomal protein L37

Chain l

Ribosomal protein L39