HL_7PWG_016

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCCCCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_016 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.2818

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PWG|1|1|C|461
7PWG|1|1|G|462
7PWG|1|1|C|463
7PWG|1|1|C|464
7PWG|1|1|C|465
7PWG|1|1|C|466
7PWG|1|1|G|467
7PWG|1|1|G|468

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain Q

Ribosomal protein L18

Chain b

60S ribosomal protein L29