HL_7PWG_021

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UCCCAG

Length

6 nucleotides

Bulged bases

7PWG|1|1|C|675, 7PWG|1|1|C|677, 7PWG|1|1|A|678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_021 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.536

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7PWG|1|1|U|674
7PWG|1|1|C|675
7PWG|1|1|C|676
7PWG|1|1|C|677
7PWG|1|1|A|678
7PWG|1|1|G|679

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain a

Ribosomal protein L27a

Chain b

60S ribosomal protein L29

Chain o

Ribosomal protein L44