HL_7PWG_025

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGCGC

Length

6 nucleotides

Bulged bases

7PWG|1|1|G|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_025 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1264

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7PWG|1|1|G|1042
7PWG|1|1|C|1043
7PWG|1|1|G|1044
7PWG|1|1|C|1045
7PWG|1|1|G|1046
7PWG|1|1|C|1047

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C

Ribosomal protein L4

Chain F

Ribosomal protein L7

Chain Q

Ribosomal protein L18