HL_7PWG_040

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAAC

Length

5 nucleotides

Bulged bases

7PWG|1|1|G|1599, 7PWG|1|1|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_040 not in the Motif Atlas

Geometric match to HL_7RQB_009

Geometric discrepancy: 0.3153

The information below is about HL_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89098.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7PWG|1|1|G|1598
7PWG|1|1|G|1599
7PWG|1|1|A|1600
7PWG|1|1|A|1601
7PWG|1|1|C|1602

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R

Ribosomal protein L19

Chain W

Ribosomal protein L24A