HL_7PWG_057

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCACCGG

Length

8 nucleotides

Bulged bases

7PWG|1|1|G|2320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_057 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.094

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7PWG|1|1|C|2319
7PWG|1|1|G|2320
7PWG|1|1|C|2321
7PWG|1|1|A|2322
7PWG|1|1|C|2323
7PWG|1|1|C|2324
7PWG|1|1|G|2325
7PWG|1|1|G|2326

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain H

Ribosomal protein L6

Chain m

Ubiquitin/Ribosomal protein L40e