HL_7PWG_060

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_060 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.1658

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7PWG|1|1|C|2442
7PWG|1|1|G|2443
7PWG|1|1|G|2445
7PWG|1|1|A|2446
7PWG|1|1|G|2447

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain H

Ribosomal protein L6

Chain V

Ribosomal protein L23

Chain m

Ubiquitin/Ribosomal protein L40e