HL_7PWG_061

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_061 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.2134

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7PWG|1|1|C|2484
7PWG|1|1|G|2485
7PWG|1|1|C|2486
7PWG|1|1|C|2487
7PWG|1|1|G|2488
7PWG|1|1|G|2489

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R

Ribosomal protein L19

Chain d

Ribosomal protein L31B