HL_7PWG_066

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_066 not in the Motif Atlas

Homologous match to HL_5TBW_186

Geometric discrepancy: 0.1188

The information below is about HL_5TBW_186

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWG|1|3|G|87
7PWG|1|3|G|88
7PWG|1|3|A|89
7PWG|1|3|G|90
7PWG|1|3|A|91
7PWG|1|3|C|92

Current chains

Chain 3

rRNA 5S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain I

Ribosomal protein L10

Chain S

60S ribosomal protein L18a