HL_7PWG_069

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_069 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.1947

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7PWG|1|4|C|108
7PWG|1|4|A|109
7PWG|1|4|G|110
7PWG|1|4|C|111
7PWG|1|4|G|112

Current chains

Chain 4

rRNA 5.8S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X

Ribosomal protein L23A

Chain j

Ribosomal protein L37

Chain l

Ribosomal protein L39