HL_7PWG_071

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCGA(OMG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_071 not in the Motif Atlas

Homologous match to HL_8P9A_122

Geometric discrepancy: 0.137

The information below is about HL_8P9A_122

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7PWG|1|1|C|308
7PWG|1|1|G|309
7PWG|1|1|C|310
7PWG|1|1|G|311
7PWG|1|1|A|312
7PWG|1|1|OMG|313

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C

Ribosomal protein L4

Chain j

Ribosomal protein L37

Chain l

Ribosomal protein L39