HL_8P9A_122

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8P9A|1|AR|A|357
8P9A|1|AR|G|358
8P9A|1|AR|U|359
8P9A|1|AR|G|360
8P9A|1|AR|A|361
8P9A|1|AR|U|362

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain DL

60S ribosomal protein L37-A

Chain DN

60S ribosomal protein L39