HL_7PWO_002

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

7PWO|1|1|C|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_002 not in the Motif Atlas

Homologous match to HL_8C3A_002

Geometric discrepancy: 0.1212

The information below is about HL_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7PWO|1|1|C|68
7PWO|1|1|A|69
7PWO|1|1|A|70
7PWO|1|1|C|71
7PWO|1|1|C|72
7PWO|1|1|G|73

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain L2

60S ribosomal protein L13

Chain N2

Ribosomal protein L15

Chain a2

Ribosomal protein L27a

Chain i2

Ribosomal protein L36-1