7PWO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7PWO_001 | 1/1/37:44 | No text annotation | geometric HL_4V9F_006 HL_48677.1 | |
| HL_7PWO_002 | 1/1/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7PWO_003 | 1/1/87:93 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_7PWO_004 | 1/1/119:123 | Mini UNCG | geometric HL_5J7L_204 NA | |
| HL_7PWO_005 | 1/1/160:167 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7PWO_006 | 1/1/174:178 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7PWO_007 | 1/1/182:190 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_7PWO_008 | 1/1/231:240 | T-loop related | homologous HL_8P9A_120 HL_63894.2 | |
| HL_7PWO_009 | 1/1/254:263 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_7PWO_100 | 1/1/308:313 | GNRA | homologous HL_8P9A_122 HL_34789.2 | |
| HL_7PWO_012 | 1/1/374:377 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_7PWO_101 | 1/1/387:396 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7PWO_015 | 1/1/450:455 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7PWO_016 | 1/1/461:468 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.5 | |
| HL_7PWO_017 | 1/1/481:486 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_7PWO_018 | 1/1/560:565 | GNRA | homologous HL_5TBW_019 NA | |
| HL_7PWO_019 | 1/1/592:601 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_7PWO_020 | 1/1/626:634 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_7PWO_021 | 1/1/674:679 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_7PWO_022 | 1/1/787:794 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_7PWO_023 | 1/1/835:841 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7PWO_024 | 1/1/857:864 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7PWO_025 | 1/1/1042:1047 | UNCG | geometric HL_6CZR_080 NA | |
| HL_7PWO_026 | 1/1/1090:1095 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7PWO_028 | 1/1/1188:1196 | No text annotation | geometric HL_7A0S_041 NA | |
| HL_7PWO_029 | 1/1/1227:1232 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_7PWO_030 | 1/1/1244:1247 | No text annotation | ||
| HL_7PWO_031 | 1/1/1271:1280 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7PWO_032 | 1/1/1300:1305 | GNRA | homologous HL_5TBW_036 NA | |
| HL_7PWO_033 | 1/1/1344:1354 | No text annotation | geometric HL_4WF9_011 HL_75660.7 | |
| HL_7PWO_034 | 1/1/1383:1389 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_7PWO_035 | 1/1/1434:1438 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7PWO_037 | 1/1/1493:1499 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7PWO_038 | 1/1/1554:1559 | UNCG | homologous HL_5TBW_043 NA | |
| HL_7PWO_040 | 1/1/1598:1602 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_7PWO_041 | 1/1/1623:1633 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_7PWO_042 | 1/1/1652:1657 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7PWO_043 | 1/1/1707:1712 | GNRA | geometric HL_3SUX_002 HL_34789.2 | |
| HL_7PWO_045 | 1/1/1779:1787 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7PWO_046 | 1/1/1856:1865 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7PWO_048 | 1/1/2004:2011 | tRNA D-loop | geometric HL_3AKZ_010 HL_20490.1 | |
| HL_7PWO_049 | 1/1/2039:2047 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_7PWO_050 | 1/1/2056:2068 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_7PWO_052 | 1/1/2116:2123 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_7PWO_053 | 1/1/2146:2156 | No text annotation | ||
| HL_7PWO_054 | 1/1/2167:2172 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7PWO_055 | 1/1/2198:2206 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7PWO_056 | 1/1/2262:2270 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7PWO_057 | 1/1/2319:2326 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7PWO_058 | 1/1/2342:2348 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7PWO_059 | 1/1/2384:2389 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7PWO_061 | 1/1/2484:2489 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7PWO_062 | 1/1/2525:2539 | No text annotation | ||
| HL_7PWO_063 | 1/1/2571:2601 | No text annotation | ||
| HL_7PWO_064 | 1/1/2615:2623 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_7PWO_065 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7PWO_067 | 1/2/138:143 | GNRA | geometric HL_5X2G_001 HL_34789.2 | |
| HL_7PWO_068 | 1/2/181:187 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7PWO_069 | 1/2/242:250 | GNRA related | homologous HL_4V88_193 NA | |
| HL_7PWO_070 | 1/2/279:286 | GNRA with extra cWW | geometric HL_4WF9_053 HL_87268.1 | |
| HL_7PWO_071 | 1/2/305:316 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7PWO_072 | 1/2/326:331 | UNCG | homologous HL_4V88_196 NA | |
| HL_7PWO_073 | 1/2/363:365 | Mini UNCG | geometric HL_7A0S_039 HL_90436.2 | |
| HL_7PWO_074 | 1/2/400:410 | No text annotation | geometric HL_4UYK_001 HL_14063.2 | |
| HL_7PWO_075 | 1/2/450:455 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7PWO_076 | 1/2/544:552 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7PWO_077 | 1/2/592:600 | tRNA anticodon loop | geometric HL_4LCK_002 HL_11974.2 | |
| HL_7PWO_078 | 1/2/651:662 | No text annotation | ||
| HL_7PWO_079 | 1/2/689:694 | GNRA | homologous HL_4V88_207 NA | |
| HL_7PWO_080 | 1/2/749:759 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7PWO_082 | 1/2/825:830 | GNRA | homologous HL_4V88_210 NA | |
| HL_7PWO_083 | 1/2/862:869 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.1 | |
| HL_7PWO_084 | 1/2/930:939 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_7PWO_085 | 1/2/1036:1041 | GNRA | geometric HL_4LFB_024 HL_34789.2 | |
| HL_7PWO_086 | 1/2/1049:1056 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7PWO_089 | 1/2/1197:1202 | GNRA | homologous HL_4V88_218 NA | |
| HL_7PWO_090 | 1/2/1239:1246 | T-loop with 2 stacked bulged bases | geometric HL_5DH6_002 HL_13999.2 | |
| HL_7PWO_091 | 1/2/1280:1288 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7PWO_093 | 1/2/1431:1436 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7PWO_102 | 1/3/32:46 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7PWO_094 | 1/3/36:42 | No text annotation | geometric HL_7A0S_011 HL_75660.7 | |
| HL_7PWO_095 | 1/3/87:92 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7PWO_096 | 1/42/48:57 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_7PWO_097 | 1/42/74:81 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7PWO_098 | 1/42/108:112 | No text annotation | geometric HL_4WF9_003 HL_75660.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7PWO_010 | GNRA with extra cWW | ||
| HL_7PWO_011 | No text annotation | ||
| HL_7PWO_013 | No text annotation | ||
| HL_7PWO_014 | Externally structured | ||
| HL_7PWO_027 | Fab BL3-6 binding hairpin with tSW | ||
| HL_7PWO_036 | No text annotation | ||
| HL_7PWO_039 | Externally structured | ||
| HL_7PWO_044 | No text annotation | ||
| HL_7PWO_047 | No text annotation | ||
| HL_7PWO_051 | Externally structured | ||
| HL_7PWO_060 | GNRA related | ||
| HL_7PWO_066 | tRNA anticodon loop | ||
| HL_7PWO_081 | No text annotation | ||
| HL_7PWO_087 | No text annotation | ||
| HL_7PWO_088 | No text annotation | ||
| HL_7PWO_092 | Externally structured | ||
| HL_7PWO_099 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7PWO_001 | 1/1/7:8, 1/42/134:136 | Single bulged C | geometric IL_4WF9_035 IL_05642.2 | |
| IL_7PWO_003 | 1/1/26:27, 1/1/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7PWO_004 | 1/1/31:37, 1/1/44:51 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.2 | |
| IL_7PWO_005 | 1/1/81:86, 1/1/94:100 | No text annotation | ||
| IL_7PWO_006 | 1/1/115:118, 1/1/128:129 | Major groove platform; stack outside cWW | geometric IL_5J7L_290 NA | |
| IL_7PWO_176 | 1/1/115:119, 1/1/123:129 | No text annotation | ||
| IL_7PWO_007 | 1/1/118:119, 1/1/123:128 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7PWO_008 | 1/1/279:282, 1/42/32:34 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_7PWO_009 | 1/1/287:289, 1/42/26:27 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7PWO_010 | 1/1/327:331, 1/1/340:352 | No text annotation | geometric IL_4V9F_014 IL_31504.1 | |
| IL_7PWO_011 | 1/1/353:359, 1/42/14:20 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7PWO_012 | 1/1/363:365, 1/42/7:10 | Major groove platform with extra cWW | geometric IL_7A0S_019 IL_36931.2 | |
| IL_7PWO_013 | 1/1/426:431, 1/1/440:444 | No text annotation | ||
| IL_7PWO_014 | 1/1/474:475, 1/1/492:494 | Single stack bend | geometric IL_4V9F_081 IL_15011.2 | |
| IL_7PWO_015 | 1/1/519:521, 1/1/654:656 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7PWO_016 | 1/1/521:525, 1/1/647:654 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_7PWO_017 | 1/1/549:550, 1/1/575:577 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_7PWO_018 | 1/1/550:554, 1/1/571:575 | Triple sheared | geometric IL_3MXH_002 IL_15190.2 | |
| IL_7PWO_019 | 1/1/585:588, 1/1/604:606 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7PWO_020 | 1/1/589:591, 1/1/602:603 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7PWO_021 | 1/1/623:625, 1/1/635:639 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_7PWO_022 | 1/1/685:686, 1/1/820:822 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7PWO_023 | 1/1/697:699, 1/1/809:810 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7PWO_024 | 1/1/707:711, 1/1/764:768 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_7PWO_025 | 1/1/711:712, 1/1/762:764 | Minor groove platform related | geometric IL_7TZS_003 IL_34520.2 | |
| IL_7PWO_026 | 1/1/713:717, 1/1/758:761 | C-loop | homologous IL_5TBW_040 NA | |
| IL_7PWO_027 | 1/1/718:722, 1/1/753:757 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_7PWO_028 | 1/1/829:831, 1/1/845:847 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_7PWO_029 | 1/1/876:880, 1/1/1027:1031 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7PWO_030 | 1/1/882:889, 1/1/1024:1025 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7PWO_032 | 1/1/906:908, 1/1/995:996 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_7PWO_033 | 1/1/1062:1064, 1/1/1115:1118 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_7PWO_034 | 1/1/1071:1075, 1/1/1107:1108 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7PWO_035 | 1/1/1076:1083, 1/1/1102:1106 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7PWO_036 | 1/1/1087:1089, 1/1/1096:1098 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_7PWO_037 | 1/1/1131:1137, 1/1/1841:1846 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7PWO_038 | 1/1/1169:1171, 1/1/1485:1487 | Isolated non-canonical cWW pair | geometric IL_5C5W_002 IL_01003.2 | |
| IL_7PWO_039 | 1/1/1184:1188, 1/1/1196:1198 | C-loop | geometric IL_4V9F_051 IL_63596.12 | |
| IL_7PWO_040 | 1/1/1215:1219, 1/1/1257:1262 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_7PWO_041 | 1/1/1219:1220, 1/1/1255:1257 | Single bulged U | geometric IL_7KVT_002 IL_97561.2 | |
| IL_7PWO_042 | 1/1/1236:1241, 1/1/1250:1252 | No text annotation | ||
| IL_7PWO_043 | 1/1/1325:1328, 1/1/1428:1431 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7PWO_044 | 1/1/1334:1335, 1/1/1420:1422 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_7PWO_045 | 1/1/1368:1372, 1/1/1402:1406 | No text annotation | geometric IL_6JXM_002 IL_14445.1 | |
| IL_7PWO_046 | 1/1/1377:1382, 1/1/1390:1397 | Kink-turn | geometric IL_3U4M_004 IL_90775.2 | |
| IL_7PWO_047 | 1/1/1514:1519, 1/1/1834:1836 | No text annotation | geometric IL_5J7L_304 NA | |
| IL_7PWO_178 | 1/1/1526:1528, 1/1/1825:1827 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7PWO_179 | 1/1/1529:1532, 1/1/1823:1824 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_7PWO_180 | 1/1/1529:1537, 1/1/1820:1824 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_7PWO_051 | 1/1/1532:1537, 1/1/1820:1823 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7PWO_052 | 1/1/1549:1554, 1/1/1559:1565 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7PWO_053 | 1/1/1571:1573, 1/1/1594:1596 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7PWO_054 | 1/1/1616:1617, 1/1/1810:1812 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_7PWO_055 | 1/1/1644:1649, 1/1/1660:1667 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_7PWO_056 | 1/1/1683:1686, 1/1/1732:1733 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7PWO_057 | 1/1/1687:1688, 1/1/1728:1731 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_7PWO_058 | 1/1/1693:1697, 1/1/1722:1724 | 8-nt loop receptor | geometric IL_5T83_002 IL_83497.1 | |
| IL_7PWO_059 | 1/1/1698:1703, 1/1/1716:1721 | No text annotation | ||
| IL_7PWO_060 | 1/1/1705:1707, 1/1/1712:1714 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.2 | |
| IL_7PWO_061 | 1/1/1763:1764, 1/1/1794:1797 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7PWO_063 | 1/1/1878:1881, 1/1/2407:2409 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
| IL_7PWO_065 | 1/1/1883:1885, 1/1/2402:2405 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_7PWO_066 | 1/1/1895:1898, 1/1/2233:2235 | Isolated non-canonical cWW pair | geometric IL_4ZC7_001 IL_01003.2 | |
| IL_7PWO_067 | 1/1/1898:1900, 1/1/2229:2233 | No text annotation | ||
| IL_7PWO_069 | 1/1/1910:1912, 1/1/2027:2030 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_7PWO_070 | 1/1/2037:2038, 1/1/2048:2050 | No text annotation | ||
| IL_7PWO_071 | 1/1/2089:2091, 1/1/2109:2113 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7PWO_072 | 1/1/2091:2093, 1/1/2107:2109 | Isolated non-canonical cWW pair | geometric IL_1U9S_007 IL_01003.2 | |
| IL_7PWO_073 | 1/1/2137:2139, 1/1/2163:2164 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_7PWO_074 | 1/1/2192:2194, 1/1/2210:2211 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_7PWO_075 | 1/1/2245:2248, 1/1/2285:2289 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7PWO_076 | 1/1/2248:2250, 1/1/2284:2285 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7PWO_181 | 1/1/2250:2252, 1/1/2280:2284 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_7PWO_078 | 1/1/2257:2261, 1/1/2271:2275 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7PWO_079 | 1/1/2298:2299, 1/1/2370:2372 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7PWO_080 | 1/1/2301:2303, 1/1/2364:2368 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7PWO_081 | 1/1/2303:2304, 1/1/2361:2364 | Multiple bulged bases | geometric IL_4V9F_088 IL_44609.2 | |
| IL_7PWO_082 | 1/1/2313:2314, 1/1/2331:2334 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_7PWO_083 | 1/1/2340:2342, 1/1/2348:2350 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_7PWO_085 | 1/1/2421:2424, 1/1/2554:2557 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7PWO_086 | 1/1/2436:2442, 1/1/2447:2452 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4V9F_092 IL_02666.1 | |
| IL_7PWO_087 | 1/1/2464:2468, 1/1/2507:2509 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7PWO_088 | 1/1/2468:2470, 1/1/2505:2507 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.2 | |
| IL_7PWO_089 | 1/1/2470:2475, 1/1/2500:2505 | No text annotation | ||
| IL_7PWO_091 | 1/1/2517:2522, 1/1/2542:2547 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_7PWO_093 | 1/1/2567:2569, 1/1/2603:2605 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_7PWO_094 | 1/1/2635:2636, 1/1/2677:2679 | Single bulged C | geometric IL_5KPY_001 IL_05642.2 | |
| IL_7PWO_095 | 1/1/2639:2644, 1/1/2670:2674 | tHS double platform | geometric IL_4V9F_099 IL_48489.1 | |
| IL_7PWO_096 | 1/1/2649:2652, 1/1/2663:2666 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_7PWO_097 | 1/2/35:40, 1/2/376:382 | No text annotation | ||
| IL_7PWO_098 | 1/2/41:47, 1/2/343:345 | No text annotation | geometric IL_8C3A_395 NA | |
| IL_7PWO_099 | 1/2/49:51, 1/2/340:341 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7PWO_101 | 1/2/96:99, 1/2/216:219 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_7PWO_102 | 1/2/100:103, 1/2/214:215 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.2 | |
| IL_7PWO_182 | 1/2/104:108, 1/2/210:213 | UAA/GAN related | geometric IL_3LOA_001 IL_60988.2 | |
| IL_7PWO_104 | 1/2/126:133, 1/2/148:156 | No text annotation | ||
| IL_7PWO_105 | 1/2/163:168, 1/2/192:196 | No text annotation | ||
| IL_7PWO_107 | 1/2/225:230, 1/2/260:267 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7PWO_108 | 1/2/232:235, 1/2/257:258 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_7PWO_109 | 1/2/275:277, 1/2/288:293 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7PWO_110 | 1/2/323:325, 1/2/332:334 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_7PWO_184 | 1/2/355:360, 1/2/368:371 | No text annotation | ||
| IL_7PWO_112 | 1/2/397:399, 1/2/411:413 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_7PWO_113 | 1/2/429:438, 1/2/468:471 | No text annotation | ||
| IL_7PWO_114 | 1/2/443:449, 1/2/456:464 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_7PWO_115 | 1/2/497:503, 1/2/846:847 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7PWO_116 | 1/2/508:512, 1/2/720:724 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7PWO_117 | 1/2/524:526, 1/2/580:582 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.2 | |
| IL_7PWO_118 | 1/2/526:527, 1/2/577:580 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_7PWO_119 | 1/2/531:533, 1/2/570:573 | Isolated non-canonical cWW pair | geometric IL_1XJR_003 IL_01003.2 | |
| IL_7PWO_120 | 1/2/533:539, 1/2/567:570 | No text annotation | homologous IL_8C3A_433 NA | |
| IL_7PWO_122 | 1/2/588:589, 1/2/604:606 | No text annotation | ||
| IL_7PWO_185 | 1/2/588:591, 1/2/601:606 | No text annotation | ||
| IL_7PWO_123 | 1/2/589:591, 1/2/601:604 | No text annotation | ||
| IL_7PWO_124 | 1/2/617:618, 1/2/714:717 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_7PWO_125 | 1/2/620:621, 1/2/710:712 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_7PWO_126 | 1/2/624:626, 1/2/705:707 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_01003.2 | |
| IL_7PWO_127 | 1/2/626:630, 1/2/702:705 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_7PWO_128 | 1/2/637:641, 1/2/675:679 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_71154.2 | |
| IL_7PWO_129 | 1/2/644:646, 1/2/670:672 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.2 | |
| IL_7PWO_130 | 1/2/647:651, 1/2/662:669 | Kink-turn | geometric IL_6UFM_001 IL_71972.1 | |
| IL_7PWO_131 | 1/2/737:742, 1/2/766:768 | Other IL | homologous IL_4V88_435 NA | |
| IL_7PWO_132 | 1/2/742:746, 1/2/762:766 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_7PWO_133 | 1/2/747:749, 1/2/759:761 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_01003.2 | |
| IL_7PWO_134 | 1/2/786:788, 1/2/837:843 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7PWO_135 | 1/2/801:803, 1/2/809:811 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.2 | |
| IL_7PWO_136 | 1/2/853:860, 1/2/871:876 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7PWO_137 | 1/2/888:889, 1/2/1316:1318 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7PWO_186 | 1/2/891:893, 1/2/1313:1314 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_7PWO_140 | 1/2/915:917, 1/2/1168:1170 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7PWO_187 | 1/2/919:921, 1/2/1163:1166 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_7PWO_141 | 1/2/920:921, 1/2/1163:1165 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7PWO_142 | 1/2/954:956, 1/2/1152:1154 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.2 | |
| IL_7PWO_144 | 1/2/1008:1010, 1/2/1144:1145 | Single bulged U | geometric IL_5J7L_046 NA | |
| IL_7PWO_146 | 1/2/1012:1016, 1/2/1140:1142 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7PWO_189 | 1/2/1012:1018, 1/2/1134:1142 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_7PWO_147 | 1/2/1016:1018, 1/2/1134:1140 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_7PWO_148 | 1/2/1019:1021, 1/2/1130:1133 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 IL_01003.2 | |
| IL_7PWO_149 | 1/2/1029:1031, 1/2/1064:1066 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7PWO_151 | 1/2/1095:1098, 1/2/1111:1117 | No text annotation | geometric IL_4LFB_050 IL_32376.1 | |
| IL_7PWO_152 | 1/2/1194:1196, 1/2/1203:1205 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7PWO_153 | 1/2/1228:1233, 1/2/1252:1257 | No text annotation | homologous IL_4V88_462 NA | |
| IL_7PWO_154 | 1/2/1234:1236, 1/2/1249:1251 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.2 | |
| IL_7PWO_155 | 1/2/1277:1279, 1/2/1289:1291 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_01003.2 | |
| IL_7PWO_156 | 1/2/1322:1324, 1/2/1417:1420 | No text annotation | homologous IL_4V88_463 NA | |
| IL_7PWO_157 | 1/2/1324:1327, 1/2/1413:1417 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7PWO_158 | 1/2/1328:1330, 1/2/1410:1412 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_7PWO_159 | 1/2/1330:1332, 1/2/1407:1410 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_76400.1 | |
| IL_7PWO_160 | 1/2/1336:1338, 1/2/1401:1403 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7PWO_161 | 1/2/1339:1342, 1/2/1397:1400 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7PWO_162 | 1/2/1342:1344, 1/2/1396:1397 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_7PWO_164 | 1/2/1351:1353, 1/2/1387:1389 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7PWO_165 | 1/2/1355:1358, 1/2/1382:1385 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7PWO_166 | 1/2/1360:1362, 1/2/1378:1380 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.2 | |
| IL_7PWO_167 | 1/2/1364:1368, 1/2/1372:1376 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_7PWO_169 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7PWO_170 | 1/3/21:27, 1/3/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7PWO_171 | 1/3/28:30, 1/3/48:52 | No text annotation | homologous IL_4WF9_114 NA | |
| IL_7PWO_172 | 1/3/32:36, 1/3/42:46 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_7PWO_173 | 1/3/72:79, 1/3/99:105 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7PWO_174 | 1/3/83:86, 1/3/93:95 | Isolated cWH basepair | geometric IL_4KQ0_003 IL_10892.2 | |
| IL_7PWO_175 | 1/42/70:74, 1/42/81:91 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7PWO_002 | Isolated non-canonical cWW pair | ||
| IL_7PWO_177 | Isolated cWH basepair | ||
| IL_7PWO_031 | No text annotation | ||
| IL_7PWO_048 | Isolated non-canonical cWW pair | ||
| IL_7PWO_049 | No text annotation | ||
| IL_7PWO_050 | Major groove platform with extra pair | ||
| IL_7PWO_062 | No text annotation | ||
| IL_7PWO_064 | Isolated non-canonical cWW pair | ||
| IL_7PWO_068 | Isolated non-canonical cWW pair | ||
| IL_7PWO_077 | No text annotation | ||
| IL_7PWO_084 | No text annotation | ||
| IL_7PWO_090 | Isolated cWS basepair | ||
| IL_7PWO_092 | No text annotation | ||
| IL_7PWO_100 | Isolated non-canonical cWW pair | ||
| IL_7PWO_103 | No text annotation | ||
| IL_7PWO_106 | No text annotation | ||
| IL_7PWO_183 | Isolated cWH basepair | ||
| IL_7PWO_111 | No text annotation | ||
| IL_7PWO_121 | No text annotation | ||
| IL_7PWO_138 | Isolated non-canonical cWW pair | ||
| IL_7PWO_139 | C-loop | ||
| IL_7PWO_143 | No text annotation | ||
| IL_7PWO_188 | Isolated non-canonical cWW pair | ||
| IL_7PWO_145 | No text annotation | ||
| IL_7PWO_150 | Isolated non-canonical cWW pair | ||
| IL_7PWO_190 | Tandem non-canonical cWW pairs | ||
| IL_7PWO_163 | Isolated non-canonical cWW pair | ||
| IL_7PWO_168 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7PWO_026 | 1/1/150:156, 1/1/171:180, 1/1/192:197 | No text annotation | ||
| J3_7PWO_027 | 1/1/290:307, 1/1/314:319, 1/42/22:25 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7PWO_001 | 1/1/320:327, 1/1/352:353, 1/42/20:21 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7PWO_028 | 1/1/320:331, 1/1/340:353, 1/42/20:21 | No text annotation | geometric J3_4V9F_012 J3_24879.1 | |
| J3_7PWO_002 | 1/1/530:536, 1/1/621:623, 1/1/639:642 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_7PWO_003 | 1/1/544:547, 1/1/579:583, 1/1/608:613 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7PWO_004 | 1/1/700:701, 1/1/774:776, 1/1/804:808 | No text annotation | ||
| J3_7PWO_005 | 1/1/1162:1168, 1/1/1488:1490, 1/1/1502:1505 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7PWO_006 | 1/1/1171:1174, 1/1/1471:1474, 1/1/1483:1485 | No text annotation | ||
| J3_7PWO_007 | 1/1/1209:1214, 1/1/1263:1267, 1/1/1284:1285 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7PWO_008 | 1/1/1221:1225, 1/1/1234:1236, 1/1/1252:1254 | No text annotation | ||
| J3_7PWO_029 | 1/1/1319:1323, 1/1/1433:1434, 1/1/1438:1443 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7PWO_009 | 1/1/1919:1922, 1/1/1997:2001, 1/1/2014:2020 | No text annotation | geometric J3_4V9F_007 J3_86017.1 | |
| J3_7PWO_030 | 1/1/2074:2076, 1/1/2177:2188, 1/1/2215:2220 | No text annotation | homologous J3_8P9A_061 J3_04772.1 | |
| J3_7PWO_010 | 1/1/2087:2089, 1/1/2113:2115, 1/1/2124:2129 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7PWO_011 | 1/1/2308:2311, 1/1/2336:2338, 1/1/2352:2357 | No text annotation | ||
| J3_7PWO_012 | 1/1/2610:2612, 1/1/2626:2629, 1/1/2687:2692 | No text annotation | ||
| J3_7PWO_013 | 1/2/40:41, 1/2/345:353, 1/2/373:376 | No text annotation | ||
| J3_7PWO_015 | 1/2/633:636, 1/2/680:688, 1/2/695:699 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7PWO_016 | 1/2/789:792, 1/2/820:824, 1/2/831:836 | No text annotation | ||
| J3_7PWO_017 | 1/2/903:906, 1/2/1267:1273, 1/2/1295:1302 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7PWO_018 | 1/2/910:913, 1/2/1172:1174, 1/2/1260:1263 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7PWO_032 | 1/2/922:929, 1/2/940:950, 1/2/1158:1162 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_7PWO_020 | 1/2/1023:1028, 1/2/1067:1072, 1/2/1123:1128 | No text annotation | homologous J3_4V88_039 NA | |
| J3_7PWO_022 | 1/2/1076:1078, 1/2/1092:1095, 1/2/1117:1119 | No text annotation | geometric J3_4V88_040 NA | |
| J3_7PWO_031 | 1/2/1076:1078, 1/2/1092:1098, 1/2/1111:1119 | No text annotation | geometric J3_5J7L_054 NA | |
| J3_7PWO_023 | 1/2/1174:1178, 1/2/1221:1228, 1/2/1257:1260 | No text annotation | homologous J3_4V88_041 NA | |
| J3_7PWO_024 | 1/3/9:14, 1/3/66:67, 1/3/110:111 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7PWO_025 | 1/42/45:46, 1/42/59:65, 1/42/96:100 | No text annotation | geometric J3_5TBW_071 NA | |
| J4_7PWO_001 | 1/1/109:110, 1/1/220:225, 1/1/246:250, 1/1/267:270 | No text annotation | ||
| J4_7PWO_002 | 1/1/150:156, 1/1/171:174, 1/1/178:180, 1/1/192:197 | No text annotation | ||
| J4_7PWO_003 | 1/1/1175:1179, 1/1/1203:1208, 1/1/1286:1287, 1/1/1463:1470 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_7PWO_004 | 1/1/1618:1622, 1/1/1634:1638, 1/1/1673:1677, 1/1/1804:1809 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_7PWO_005 | 1/1/1679:1681, 1/1/1735:1736, 1/1/1754:1763, 1/1/1797:1802 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7PWO_006 | 1/1/2077:2081, 1/1/2135:2137, 1/1/2164:2165, 1/1/2174:2176 | No text annotation | ||
| J4_7PWO_007 | 1/1/2077:2081, 1/1/2135:2139, 1/1/2163:2165, 1/1/2174:2176 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
| J4_7PWO_008 | 1/1/2426:2429, 1/1/2459:2460, 1/1/2513:2515, 1/1/2549:2552 | No text annotation | ||
| J4_7PWO_009 | 1/2/86:94, 1/2/221:223, 1/2/269:273, 1/2/295:296 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_7PWO_010 | 1/2/503:505, 1/2/727:732, 1/2/773:784, 1/2/845:846 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J5_7PWO_001 | 1/1/19:21, 1/42/36:43, 1/42/102:107, 1/42/113:114, 1/42/121:123 | No text annotation | ||
| J5_7PWO_002 | 1/1/405:410, 1/1/515:518, 1/1/657:660, 1/1/1061:1062, 1/1/1118:1124 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_7PWO_003 | 1/1/422:425, 1/1/445:449, 1/1/456:461, 1/1/468:469, 1/1/499:503 | No text annotation | ||
| J5_7PWO_004 | 1/1/1537:1545, 1/1/1569:1570, 1/1/1597:1598, 1/1/1602:1610, 1/1/1818:1820 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_7PWO_005 | 1/1/1886:1893, 1/1/2237:2245, 1/1/2289:2298, 1/1/2372:2378, 1/1/2396:2401 | No text annotation | ||
| J5_7PWO_006 | 1/1/1903:1906, 1/1/2034:2037, 1/1/2050:2051, 1/1/2073:2074, 1/1/2220:2226 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_7PWO_007 | 1/2/53:56, 1/2/77:84, 1/2/298:300, 1/2/321:323, 1/2/334:338 | No text annotation | homologous J5_8C3A_020 NA | |
| J6_7PWO_001 | 1/1/21:26, 1/1/57:67, 1/1/74:78, 1/1/103:107, 1/1/272:279, 1/42/34:36 | No text annotation | ||
| J6_7PWO_002 | 1/1/1903:1906, 1/1/2034:2037, 1/1/2050:2051, 1/1/2073:2076, 1/1/2177:2188, 1/1/2215:2226 | No text annotation | ||
| J7_7PWO_001 | 1/1/665:670, 1/1/683:684, 1/1/823:826, 1/1/850:855, 1/1/866:870, 1/1/1037:1038, 1/1/1051:1056 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7PWO_014 | No text annotation | ||
| J3_7PWO_019 | No text annotation | ||
| J3_7PWO_021 | No text annotation |
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