HL_7PWO_005

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCCGAGGG

Length

8 nucleotides

Bulged bases

7PWO|1|1|G|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2918

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7PWO|1|1|C|160
7PWO|1|1|C|161
7PWO|1|1|C|162
7PWO|1|1|G|163
7PWO|1|1|A|164
7PWO|1|1|G|165
7PWO|1|1|G|166
7PWO|1|1|G|167

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain Y2

Ribosomal protein L26

Chain e2

Ribosomal protein L32