HL_7PWO_009
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGCGCGGCCC
- Length
- 10 nucleotides
- Bulged bases
- 7PWO|1|1|G|255, 7PWO|1|1|C|256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PWO_009 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.1112
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7PWO|1|1|G|254
7PWO|1|1|G|255
7PWO|1|1|C|256
7PWO|1|1|G|257
7PWO|1|1|C|258
7PWO|1|1|G|259
7PWO|1|1|G|260
7PWO|1|1|C|261
7PWO|1|1|C|262
7PWO|1|1|C|263
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain N2
- Ribosomal protein L15
- Chain a2
- Ribosomal protein L27a
- Chain i2
- Ribosomal protein L36-1
- Chain o2
- Ribosomal protein L44
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