HL_7PWO_010

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGCGA(OMG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_010 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3595

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PWO|1|1|G|307
7PWO|1|1|C|308
7PWO|1|1|G|309
7PWO|1|1|C|310
7PWO|1|1|G|311
7PWO|1|1|A|312
7PWO|1|1|OMG|313
7PWO|1|1|C|314

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C2

Ribosomal protein L4

Chain j2

Ribosomal protein L37

Chain l2

Ribosomal protein L39