HL_7PWO_017

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUGCG

Length

6 nucleotides

Bulged bases

7PWO|1|1|U|483, 7PWO|1|1|C|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_017 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2638

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7PWO|1|1|C|481
7PWO|1|1|C|482
7PWO|1|1|U|483
7PWO|1|1|G|484
7PWO|1|1|C|485
7PWO|1|1|G|486

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain L2

60S ribosomal protein L13

Chain a2

Ribosomal protein L27a