HL_7PWO_018

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_018 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0842

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWO|1|1|C|560
7PWO|1|1|G|561
7PWO|1|1|A|562
7PWO|1|1|A|563
7PWO|1|1|A|564
7PWO|1|1|G|565

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain L1

SSU ribosomal protein S17P

Chain N1

Ribosomal protein S13