HL_7PWO_025

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGCGC

Length

6 nucleotides

Bulged bases

7PWO|1|1|G|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_025 not in the Motif Atlas

Geometric match to HL_6CZR_080

Geometric discrepancy: 0.1198

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

7PWO|1|1|G|1042
7PWO|1|1|C|1043
7PWO|1|1|G|1044
7PWO|1|1|C|1045
7PWO|1|1|G|1046
7PWO|1|1|C|1047

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C2

Ribosomal protein L4

Chain F2

Ribosomal protein L7

Chain Q2

Ribosomal protein L18