HL_7PWO_027

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCCCCC

Length

6 nucleotides

Bulged bases

7PWO|1|1|C|1152

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_027 not in the Motif Atlas

Geometric match to HL_9DN4_001

Geometric discrepancy: 0.399

The information below is about HL_9DN4_001

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_22584.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

21

Unit IDs

7PWO|1|1|G|1148
7PWO|1|1|C|1149
7PWO|1|1|C|1151
7PWO|1|1|C|1152
7PWO|1|1|C|1153
7PWO|1|1|C|1154

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R2

Ribosomal protein L19

Chain d2

Ribosomal protein L31B