HL_7PWO_033

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGCGCCCCGG

Length

11 nucleotides

Bulged bases

7PWO|1|1|C|1352, 7PWO|1|1|G|1353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_033 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1135

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7PWO|1|1|C|1344
7PWO|1|1|G|1345
7PWO|1|1|G|1346
7PWO|1|1|C|1347
7PWO|1|1|G|1348
7PWO|1|1|C|1349
7PWO|1|1|C|1350
7PWO|1|1|C|1351
7PWO|1|1|C|1352
7PWO|1|1|G|1353
7PWO|1|1|G|1354

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R2

Ribosomal protein L19

Chain U2

Ribosomal protein eL22