HL_7PWO_034

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUUGCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_034 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3254

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7PWO|1|1|C|1383
7PWO|1|1|C|1384
7PWO|1|1|U|1385
7PWO|1|1|U|1386
7PWO|1|1|G|1387
7PWO|1|1|C|1388
7PWO|1|1|G|1389

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R2

Ribosomal protein L19

Chain p2

Ribosomal protein L37a